species:   Opsin
pid:       PID1929
parent:    n_os_milR_97
paralog:   
locus:     JAAVMX010000003.1:11850903-11851190
matures:   ['AGUAUGUUUUUCUGAUU', 'UUAGAAAGUUAUAGUA']
srr:       SRR12952899
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952899.cram JAAVMX010000003.1:11850903-11851190

0 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

        *********************                                                                                                                                                                                                                                       ********************        
UUAUGUCUUAAGUAUGUUUUUCUGAUUUUUCUUGUAAAGUAAUGCUUUUUAAAUCCGAUCGUCGUUUUCUUUCUUCUUUCUUAUUCGUAUGUGUGUGUGCGUAUGUAUAUAUGUUCUUCUUUAUUUAAUCUAGGCAUUCUAGUCUUCUUAUAAUAGUUAGAAGCUCUCCUUUGCAUAGUAUAAUCGUAUAAAGUAUAGCUAUCGAAAGAGUUAUAGUAGAGUCUUUAGUUAUCUUCUAGGUUGCUAUUGCUAAUGCAUAAAGAAUUAGAAAGUUAUAGUAAGGUAUAA
.(((((((((..((((.(((((((((((((..((((.((((((((..((((....(((...)))......................(((((....(((((.((((((.....(..((((((((((......((((......))))......)))))..)))))..).....)))))))))))..))))).(((.(((((((....((((.((......)).)))))))))))))).))))..)).))))))..))))..))))))))))))).)))).))))))))).
----------AGUAUGUUUUUCUGAUU--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=17 a=0 c
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UUAGAAAGUUAUAGUA-------- l=16 a=0 c*
----------AGUAUGUUUUUCUGAUUUU------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=19 a=1 ma
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAUUAGAAAGUUAUAGUA-------- l=18 a=0 ma*

----------AGUAUGUUUUUCUGAUUUU------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- l=19 a=1 (ma)

mb-01011
ax-1011101
ku-01
ss-100011111110
fn-011
